Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g00957.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 972

Length: 1620
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33


Found at i:1061 original size:3 final size:3

Alignment explanation


    Indices: 1053--1103  Score: 50
    Period size: 3  Copynumber: 17.0  Consensus size: 3

       1043 CAAGCCTGTT

                        *             *          *    *                 
       1053 TCA TCA TCA ACA TCA TCA TCG TCCA -CA CCA TTA TCA TCA TCA TCA
          1 TCA TCA TCA TCA TCA TCA TCA T-CA TCA TCA TCA TCA TCA TCA TCA

                   
       1098 TCA TCA
          1 TCA TCA

       1104 CTGTCATCTC


Statistics
Matches: 39,  Mismatches: 7, Indels: 4
        0.78            0.14        0.08

Matches are distributed among these distances:
   2    2  0.05
   3   36  0.92
   4    1  0.03

ACGTcount: A:0.33, C:0.35, G:0.02, T:0.29


Consensus pattern (3 bp):   
TCA

Done.