Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00602.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:1068 original size:16 final size:17

Alignment explanation


    Indices: 1035--1068  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1025 ATTTTGGATT

                         *   
       1035 TGAGTTTTTTTATTTAA
          1 TGAGTTTTTTTATATAA

                             
       1052 TGAGTTTTTTTA-ATAA
          1 TGAGTTTTTTTATATAA

             
       1068 T
          1 T

       1069 TTTTTATATT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    4  0.25
  17   12  0.75

ACGTcount: A:0.26, C:0.00, G:0.12, T:0.62


Consensus pattern (17 bp):   
TGAGTTTTTTTATATAA
Done.