Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00605.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2661
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25


Found at i:702 original size:3 final size:3

Alignment explanation


    Indices: 677--729  Score: 52
    Period size: 3  Copynumber: 17.3  Consensus size: 3

        667 TAGTGGCGGT

                  *              *                        *       *   * 
        677 AGG AGT AGG AGAG AGG TGG AGG AGG AGG AGG AGG AAG AGG ACG AAG
          1 AGG AGG AGG AG-G AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG AGG

                     
        723 AGG AGG A
          1 AGG AGG A

        730 AATAGTGACG


Statistics
Matches: 40,  Mismatches: 9, Indels: 2
        0.78            0.18        0.04

Matches are distributed among these distances:
   3   37  0.93
   4    3  0.08

ACGTcount: A:0.38, C:0.02, G:0.57, T:0.04


Consensus pattern (3 bp):   
AGG

Done.