Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01010.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4288
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33


Found at i:2352 original size:25 final size:24

Alignment explanation


    Indices: 2305--2353  Score: 62
    Period size: 25  Copynumber: 2.0  Consensus size: 24

       2295 TTATTAAATG

                              *     
       2305 TCTAACAACGAAAAACATGAAAAA
          1 TCTAACAACGAAAAACATAAAAAA

                         *  *        
       2329 TCTAACTAACGAATAATATAAAAAA
          1 TCTAAC-AACGAAAAACATAAAAAA

       2354 CATGTTAAAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  24    6  0.29
  25   15  0.71

ACGTcount: A:0.61, C:0.14, G:0.06, T:0.18


Consensus pattern (24 bp):   
TCTAACAACGAAAAACATAAAAAA
Done.