Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01026.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3303
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30


Found at i:147 original size:32 final size:32

Alignment explanation


    Indices: 106--172  Score: 134
    Period size: 32  Copynumber: 2.1  Consensus size: 32

         96 TCTTGTTAAT

                                            
        106 ATTCTTTTGTGTGTTTTTCTGGTTTTATACAA
          1 ATTCTTTTGTGTGTTTTTCTGGTTTTATACAA

                                            
        138 ATTCTTTTGTGTGTTTTTCTGGTTTTATACAA
          1 ATTCTTTTGTGTGTTTTTCTGGTTTTATACAA

               
        170 ATT
          1 ATT

        173 AGTTTTCTTT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   35  1.00

ACGTcount: A:0.16, C:0.09, G:0.15, T:0.60


Consensus pattern (32 bp):   
ATTCTTTTGTGTGTTTTTCTGGTTTTATACAA

Found at i:195 original size:30 final size:32

Alignment explanation


    Indices: 111--195  Score: 93
    Period size: 32  Copynumber: 2.7  Consensus size: 32

        101 TTAATATTCT

                 *    *                   **
        111 TTTGTGTGTTTTTCTGGTTTTATACAAATTCT
          1 TTTGTCTGTTCTTCTGGTTTTATACAAATTAG

                 *    *                     
        143 TTTGTGTGTTTTTCTGGTTTTATACAAATTAG
          1 TTTGTCTGTTCTTCTGGTTTTATACAAATTAG

                           *       
        175 TTT-TCT-TTCTTCTTGTTTTAT
          1 TTTGTCTGTTCTTCTGGTTTTAT

        196 TTTTGTTGTA


Statistics
Matches: 48,  Mismatches: 5, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  30   13  0.27
  31    2  0.04
  32   33  0.69

ACGTcount: A:0.14, C:0.09, G:0.14, T:0.62


Consensus pattern (32 bp):   
TTTGTCTGTTCTTCTGGTTTTATACAAATTAG
Done.