Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01042.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1150
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:1013 original size:30 final size:30

Alignment explanation


    Indices: 979--1038  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        969 TCTTTCCTTC

                                          
        979 TTTGTATATTATTGTCTGGTATGAACTTTA
          1 TTTGTATATTATTGTCTGGTATGAACTTTA

                                          
       1009 TTTGTATATTATTGTCTGGTATGAACTTTA
          1 TTTGTATATTATTGTCTGGTATGAACTTTA

       1039 GTCCAAAAAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.23, C:0.07, G:0.17, T:0.53


Consensus pattern (30 bp):   
TTTGTATATTATTGTCTGGTATGAACTTTA
Done.