Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01044.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 444

Length: 741
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:386 original size:16 final size:15

Alignment explanation


    Indices: 365--394  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

        355 CCAAATTTAC

                            
        365 AAAATAAATAAAAATA
          1 AAAATAAA-AAAAATA

                          
        381 AAAATAAAAAAAAT
          1 AAAATAAAAAAAAT

        395 CCTATTTTCC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17


Consensus pattern (15 bp):   
AAAATAAAAAAAATA
Done.