Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01045.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2227
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:1148 original size:19 final size:19

Alignment explanation


    Indices: 1124--1160  Score: 74
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1114 TGGTAGAAAG

                               
       1124 AATCAGGCATGATGATTAA
          1 AATCAGGCATGATGATTAA

                              
       1143 AATCAGGCATGATGATTA
          1 AATCAGGCATGATGATTA

       1161 GCAGTATTAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.41, C:0.11, G:0.22, T:0.27


Consensus pattern (19 bp):   
AATCAGGCATGATGATTAA
Done.