Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01051.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2010
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36


Found at i:763 original size:5 final size:5

Alignment explanation


    Indices: 753--779  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

        743 AAGCATGAAG

                                            
        753 TTTTA TTTTA TTTTA TTTTA TTTTA TT
          1 TTTTA TTTTA TTTTA TTTTA TTTTA TT

        780 ATCTTTTTTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81


Consensus pattern (5 bp):   
TTTTA

Found at i:786 original size:15 final size:15

Alignment explanation


    Indices: 753--786  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        743 AAGCATGAAG

                        *  
        753 TTTTATTTTATTTTA
          1 TTTTATTTTATTATA

                          *
        768 TTTTATTTTATTATC
          1 TTTTATTTTATTATA

                
        783 TTTT
          1 TTTT

        787 TTACAGGATG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79


Consensus pattern (15 bp):   
TTTTATTTTATTATA
Done.