Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01051.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3383
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38


Found at i:1019 original size:13 final size:13

Alignment explanation


    Indices: 1001--1027  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        991 GTTTTGTTTC

                         
       1001 ATGTGATTCATTT
          1 ATGTGATTCATTT

                         
       1014 ATGTGATTCATTT
          1 ATGTGATTCATTT

             
       1027 A
          1 A

       1028 GTTTTTTGTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52


Consensus pattern (13 bp):   
ATGTGATTCATTT

Found at i:2031 original size:5 final size:5

Alignment explanation


    Indices: 2021--2047  Score: 54
    Period size: 5  Copynumber: 5.4  Consensus size: 5

       2011 AAGCATGAAG

                                            
       2021 TTTTA TTTTA TTTTA TTTTA TTTTA TT
          1 TTTTA TTTTA TTTTA TTTTA TTTTA TT

       2048 ATCTTTTTTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   22  1.00

ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81


Consensus pattern (5 bp):   
TTTTA

Found at i:2054 original size:15 final size:15

Alignment explanation


    Indices: 2021--2054  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       2011 AAGCATGAAG

                        *  
       2021 TTTTATTTTATTTTA
          1 TTTTATTTTATTATA

                          *
       2036 TTTTATTTTATTATC
          1 TTTTATTTTATTATA

                
       2051 TTTT
          1 TTTT

       2055 TTACAGGATG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79


Consensus pattern (15 bp):   
TTTTATTTTATTATA
Done.