Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01057.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2901
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31


Found at i:1463 original size:18 final size:18

Alignment explanation


    Indices: 1409--1464  Score: 76
    Period size: 18  Copynumber: 3.1  Consensus size: 18

       1399 TCATTTACGA

                            * 
       1409 TACTATTCACGTATACGG
          1 TACTATTCACGTATACAG

            *      *          
       1427 CACTATTTACGTATACAG
          1 TACTATTCACGTATACAG

                *             
       1445 TACTGTTCACGTATACAG
          1 TACTATTCACGTATACAG

              
       1463 TA
          1 TA

       1465 GTTGGGATTG


Statistics
Matches: 32,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  18   32  1.00

ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34


Consensus pattern (18 bp):   
TACTATTCACGTATACAG
Done.