Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00364.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3111
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36


Found at i:1446 original size:12 final size:12

Alignment explanation


    Indices: 1429--1476  Score: 60
    Period size: 12  Copynumber: 3.8  Consensus size: 12

       1419 TGGGAGTAAA

                        
       1429 GTTTTATATTTG
          1 GTTTTATATTTG

                          *
       1441 GTTTTATATGTTAAA
          1 GTTTTATAT-TT--G

                        
       1456 GTTTTATATTTG
          1 GTTTTATATTTG

                     
       1468 GTTTTATAT
          1 GTTTTATAT

       1477 GTTAATGACA


Statistics
Matches: 31,  Mismatches: 2, Indels: 6
        0.79            0.05        0.15

Matches are distributed among these distances:
  12   18  0.58
  13    2  0.06
  14    2  0.06
  15    9  0.29

ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62


Consensus pattern (12 bp):   
GTTTTATATTTG

Found at i:1459 original size:27 final size:27

Alignment explanation


    Indices: 1425--1481  Score: 114
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1415 TTAGTGGGAG

                                       
       1425 TAAAGTTTTATATTTGGTTTTATATGT
          1 TAAAGTTTTATATTTGGTTTTATATGT

                                       
       1452 TAAAGTTTTATATTTGGTTTTATATGT
          1 TAAAGTTTTATATTTGGTTTTATATGT

               
       1479 TAA
          1 TAA

       1482 TGACATACTG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   30  1.00

ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58


Consensus pattern (27 bp):   
TAAAGTTTTATATTTGGTTTTATATGT
Done.