Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01060.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1678
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25


Found at i:1427 original size:37 final size:37

Alignment explanation


    Indices: 1377--1450  Score: 148
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       1367 ATTAAGGAAG

                                                 
       1377 AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT
          1 AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT

                                                 
       1414 AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT
          1 AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT

       1451 CTTTTAATCA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32


Consensus pattern (37 bp):   
AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT
Done.