Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01060.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 900

Length: 1500
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25


Found at i:1249 original size:37 final size:37

Alignment explanation


    Indices: 1199--1272  Score: 148
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       1189 ATTAAGGAAG

                                                 
       1199 AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT
          1 AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT

                                                 
       1236 AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT
          1 AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT

       1273 CTTTTAATCA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32


Consensus pattern (37 bp):   
AAGATAGCTGAAATCGTTGCATATGGACATAAATTTT
Done.