Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga12g01061.F4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3878
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Found at i:3219 original size:168 final size:168
Alignment explanation
Indices: 2941--3275 Score: 634
Period size: 168 Copynumber: 2.0 Consensus size: 168
2931 TTTGATTGTG
*
2941 GTATGATCTTCTGCTATATGCTCTTTTATCGTTTAAACTTAAATGAAAATTTGCAAACTGTCTGA
1 GTATGATCTTCTGCTATATGCTCTTTTATCGATTAAACTTAAATGAAAATTTGCAAACTGTCTGA
3006 TTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
66 TTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
*
3071 AAAAAGCTGAAACCAAGGAACGAGATTGGTGCAATGTA
131 AAAAAGATGAAACCAAGGAACGAGATTGGTGCAATGTA
3109 GTATGATCTTCTGCTATATGCTCTTTTATCGATTAAACTTAAATGAAAATTTGCAAACTGTCTGA
1 GTATGATCTTCTGCTATATGCTCTTTTATCGATTAAACTTAAATGAAAATTTGCAAACTGTCTGA
3174 TTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
66 TTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
* *
3239 AAAAAGATGAAATCAGGGAACGAGATTGGTGCAATGT
131 AAAAAGATGAAACCAAGGAACGAGATTGGTGCAATGT
3276 GGTTACATGC
Statistics
Matches: 163, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
168 163 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (168 bp):
GTATGATCTTCTGCTATATGCTCTTTTATCGATTAAACTTAAATGAAAATTTGCAAACTGTCTGA
TTTTGCATGGTGGTATGTTCTTTTGTTATGTCAAAGTGATCTAAGTTTGGCTCTCTCTTTCAATA
AAAAAGATGAAACCAAGGAACGAGATTGGTGCAATGTA
Done.