Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01088.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4055
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33


Found at i:3308 original size:30 final size:30

Alignment explanation


    Indices: 3257--3313  Score: 80
    Period size: 30  Copynumber: 1.9  Consensus size: 30

       3247 AAGTTTTCAG

                         *                
       3257 GATCCACACGGACTGAGCACATGCCCAAGT
          1 GATCCACACGGACAGAGCACATGCCCAAGT

                       *                
       3287 GATCCACACGGGCAG-GCCACATGCCCA
          1 GATCCACACGGACAGAG-CACATGCCCA

       3314 TGTGCCAGCC


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  29    1  0.04
  30   23  0.96

ACGTcount: A:0.28, C:0.37, G:0.25, T:0.11


Consensus pattern (30 bp):   
GATCCACACGGACAGAGCACATGCCCAAGT
Done.