Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01113.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1140
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29


Found at i:1077 original size:14 final size:14

Alignment explanation


    Indices: 1058--1087  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1048 GTGGTTATGG

                          
       1058 TGGGGTTATATCCA
          1 TGGGGTTATATCCA

                          
       1072 TGGGGTTATATCCA
          1 TGGGGTTATATCCA

              
       1086 TG
          1 TG

       1088 TATGTATGTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.20, C:0.13, G:0.30, T:0.37


Consensus pattern (14 bp):   
TGGGGTTATATCCA
Done.