Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01118.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4084
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.23


Found at i:3422 original size:45 final size:45

Alignment explanation


    Indices: 3354--3558  Score: 365
    Period size: 45  Copynumber: 4.6  Consensus size: 45

       3344 TGTCCTGAAG

                                                         
       3354 ACTAGGAAGGAGCCTGAGGATGGTGGGTTGGAGGGAGGAGTGCAT
          1 ACTAGGAAGGAGCCTGAGGATGGTGGGTTGGAGGGAGGAGTGCAT

             * *       *                                 
       3399 ATTTGGAAGGAACCTGAGGATGGTGGGTTGGAGGGAGGAGTGCAT
          1 ACTAGGAAGGAGCCTGAGGATGGTGGGTTGGAGGGAGGAGTGCAT

                                                         
       3444 ACTAGGAAGGAGCCTGAGGATGGTGGGTTGGAGGGAGGAGTGCAT
          1 ACTAGGAAGGAGCCTGAGGATGGTGGGTTGGAGGGAGGAGTGCAT

              *                                          
       3489 ACAAGGAAGGAGCCTGAGGATGGTGGGTTGGAGGGAGGAGTGCAT
          1 ACTAGGAAGGAGCCTGAGGATGGTGGGTTGGAGGGAGGAGTGCAT

                       *             
       3534 ACTAGGAAGGAACCTGAGGATGGTG
          1 ACTAGGAAGGAGCCTGAGGATGGTG

       3559 AGAACAGAAG


Statistics
Matches: 151,  Mismatches: 9, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  45  151  1.00

ACGTcount: A:0.26, C:0.09, G:0.47, T:0.18


Consensus pattern (45 bp):   
ACTAGGAAGGAGCCTGAGGATGGTGGGTTGGAGGGAGGAGTGCAT

Done.