Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01119.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3085
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31


Found at i:2406 original size:6 final size:6

Alignment explanation


    Indices: 2395--2432  Score: 76
    Period size: 6  Copynumber: 6.3  Consensus size: 6

       2385 GAGGATATGA

                                                        
       2395 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AA
          1 AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGAGG AA

       2433 CTGGGAGTTC


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00


Consensus pattern (6 bp):   
AAGAGG

Done.