Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00618.P8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2971
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37


Found at i:1064 original size:221 final size:220

Alignment explanation


    Indices: 661--1098  Score: 644
    Period size: 221  Copynumber: 2.0  Consensus size: 220

        651 AGAAACAATA

                                  *       *  *  *                  *         
        661 TATAACCTTTTAAAAAATCCAAGTTATATGGAGTTGGAAGCTTTGCTTTAGGTTTGTGTTATGGT
          1 TATAACCTTTTAAAAAATCCAAATTATATGAAGCTGAAAGCTTTGCTTTAGGTTTATGTTATGGT

            *                 *                                   *          
        726 TTTTTATGCTATGAGATTTTGTACTTGATCTCTTATCTGCATGCATTTTGCTCCGAATTTGGAAT
         66 CTTTTATGCTATGAGATTGTGTACTTGATCTCTTATCTGCATGCATTTTGCTCCAAATTTGGAAT

                                          *   * *   *    *             *     
        791 AGTACTTAGTACTGACAGTTTGCTAATTCCTTATTTTTGCTTTTAGGTACGTTCACTGAGTGGAG
        131 AGTACTTAGTACTGACAGTTTGCTAATTCCATATGTGTGCATTTAAGTACGTTCACTGAATGGAG

                       *              
        856 TGA-TCAAAGATATTGGAAACCCCTT
        196 TGAGT-AAAGAGATTGGAAACCCCTT

                *              *                              * *        *   
        881 TATAGCCTTTTAAAAAAATGCAAATTATATGAAGCTGAAAGCTTTGCTTTTGTTTTATGTTTTGG
          1 TATAACCTTTT-AAAAAATCCAAATTATATGAAGCTGAAAGCTTTGCTTTAGGTTTATGTTATGG

                          *         *            *                           
        946 TCTTTTATGCTATGGGATTGTGTATTTGATCTCTTATTTGCATGCATTTTGCTCCAAATTTGGAA
         65 TCTTTTATGCTATGAGATTGTGTACTTGATCTCTTATCTGCATGCATTTTGCTCCAAATTTGGAA

                                                                             
       1011 TAGTACTTAGTACTGACAGTTTGCTAATTCCATATGTGTGCATTTAAGTACGTTCACTGAATGGA
        130 TAGTACTTAGTACTGACAGTTTGCTAATTCCATATGTGTGCATTTAAGTACGTTCACTGAATGGA

                                   
       1076 GTGAGTAAAGAGATTGGAAACCC
        195 GTGAGTAAAGAGATTGGAAACCC

       1099 TTCTTGGAAG


Statistics
Matches: 193,  Mismatches: 23, Indels: 3
        0.88            0.11        0.01

Matches are distributed among these distances:
 220   10  0.05
 221  182  0.94
 222    1  0.01

ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41


Consensus pattern (220 bp):   
TATAACCTTTTAAAAAATCCAAATTATATGAAGCTGAAAGCTTTGCTTTAGGTTTATGTTATGGT
CTTTTATGCTATGAGATTGTGTACTTGATCTCTTATCTGCATGCATTTTGCTCCAAATTTGGAAT
AGTACTTAGTACTGACAGTTTGCTAATTCCATATGTGTGCATTTAAGTACGTTCACTGAATGGAG
TGAGTAAAGAGATTGGAAACCCCTT
Done.