Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01127.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3412
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:1118 original size:21 final size:21

Alignment explanation


    Indices: 1075--1120  Score: 65
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       1065 GATGAAGGAT

                   *          *  
       1075 GAAAACATGAAGCAAAGCGAC
          1 GAAAACACGAAGCAAAGCAAC

                             *   
       1096 GAAAACACGAAGCAAAGTAAC
          1 GAAAACACGAAGCAAAGCAAC

                
       1117 GAAA
          1 GAAA

       1121 TCCCTCCCCC


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.57, C:0.17, G:0.22, T:0.04


Consensus pattern (21 bp):   
GAAAACACGAAGCAAAGCAAC
Done.