Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01133.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1485
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:1273 original size:23 final size:22

Alignment explanation


    Indices: 1237--1282  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 22

       1227 ACCTAATTAA

                  *  *        *    
       1237 TTTCCCTTTTTTTTCTTTTTTTT
          1 TTTCCCCTTCTTTT-TTTGTTTT

                                  
       1260 TTTCCCCTTCTTTTTTTGTTTT
          1 TTTCCCCTTCTTTTTTTGTTTT

             
       1282 T
          1 T

       1283 GGAGCTTTGT


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  22    8  0.40
  23   12  0.60

ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78


Consensus pattern (22 bp):   
TTTCCCCTTCTTTTTTTGTTTT
Done.