Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01154.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4077
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Found at i:2103 original size:43 final size:43

Alignment explanation


    Indices: 2039--2126  Score: 133
    Period size: 43  Copynumber: 2.0  Consensus size: 43

       2029 GTGTTAAATT

                                                       
       2039 AAATTGCACAAGCCCTGCTTTGTGCAACAATACTAGAAGAATG
          1 AAATTGCACAAGCCCTGCTTTGTGCAACAATACTAGAAGAATG

                         *   *         *                
       2082 AAATTGC-CGAAGTCCTTCTTTGTGCACCAATACTAGAAGAATG
          1 AAATTGCAC-AAGCCCTGCTTTGTGCAACAATACTAGAAGAATG

              
       2125 AA
          1 AA

       2127 GGCTCTCCCT


Statistics
Matches: 41,  Mismatches: 3, Indels: 2
        0.89            0.07        0.04

Matches are distributed among these distances:
  42    1  0.02
  43   40  0.98

ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25


Consensus pattern (43 bp):   
AAATTGCACAAGCCCTGCTTTGTGCAACAATACTAGAAGAATG
Done.