Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01195.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 559

Length: 933
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:912 original size:49 final size:49

Alignment explanation


    Indices: 832--929  Score: 151
    Period size: 49  Copynumber: 2.0  Consensus size: 49

        822 CATGTTGTTG

                        *    *     *                *        
        832 TATTTCATCCGGGTAACTTACATGTGCTGTTTGTTGCCACTTTTTAACA
          1 TATTTCATCCGGATAACGTACATATGCTGTTTGTTGCCACCTTTTAACA

                                      *                      
        881 TATTTCATCCGGATAACGTACATATGTTGTTTGTTGCCACCTTTTAACA
          1 TATTTCATCCGGATAACGTACATATGCTGTTTGTTGCCACCTTTTAACA

        930 CTCC


Statistics
Matches: 44,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  49   44  1.00

ACGTcount: A:0.22, C:0.20, G:0.15, T:0.42


Consensus pattern (49 bp):   
TATTTCATCCGGATAACGTACATATGCTGTTTGTTGCCACCTTTTAACA
Done.