Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01197.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2835
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28


Found at i:2513 original size:5 final size:5

Alignment explanation


    Indices: 2503--2527  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

       2493 AAATTGGTTT

                                         
       2503 CAATC CAATC CAATC CAATC CAATC
          1 CAATC CAATC CAATC CAATC CAATC

       2528 AGAGTAAAGC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20


Consensus pattern (5 bp):   
CAATC

Done.