Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01214.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 948

Length: 1580
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29


Found at i:1298 original size:44 final size:44

Alignment explanation


    Indices: 1235--1322  Score: 176
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       1225 TAGGAGATTA

                                                        
       1235 ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT
          1 ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT

                                                        
       1279 ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT
          1 ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT

       1323 TCTTATGTAT


Statistics
Matches: 44,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  44   44  1.00

ACGTcount: A:0.36, C:0.11, G:0.11, T:0.41


Consensus pattern (44 bp):   
ATTACTGCAGATCATATAAAAGTAGTAACATTACTTGTTATTTT
Done.