Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga12g01229.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2473
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Found at i:1575 original size:48 final size:48
Alignment explanation
Indices: 1504--1599 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
1494 AAGATGAAAG
* * *
1504 TAATGTTTCAGAGGAAGAAAAAGTGCAGCAGAAACTACAAGAAAAGCC
1 TAATGTTTCAAAGAAAGAAAAAGTGCAGCAGAAACAACAAGAAAAGCC
1552 TAATGTTTCAAAGAAAGAAAAAGTGCAGCAGAAACAACAAGAAAAGCC
1 TAATGTTTCAAAGAAAGAAAAAGTGCAGCAGAAACAACAAGAAAAGCC
1600 CTTGGCCTCT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.51, C:0.15, G:0.21, T:0.14
Consensus pattern (48 bp):
TAATGTTTCAAAGAAAGAAAAAGTGCAGCAGAAACAACAAGAAAAGCC
Found at i:1818 original size:192 final size:193
Alignment explanation
Indices: 1443--1938 Score: 904
Period size: 192 Copynumber: 2.6 Consensus size: 193
1433 GCGTTGTGCT
*
1443 ACTGTTGGAACTGCAGCTTGAAAAGATTCTGCTGTTGTTGTTCAGATTCAGAAGATGAAAGTAAT
1 ACTGTTGGAACTGCAGCTTGAAAAGATTCTGCTGTTGTTGTTCAGATTCGGAAGATGAAAGTAAT
1508 GTTTCAGAGGAAGAAAAAGTGCAGCAGAAACTACAAGAAAAGCCTAATGTTTCAAAGAAAGAAAA
66 GTTTCAGAGGAAGAAAAAGTGCAGCAGAAACTACAAGAAAAGCCTAATGTTTCAAAGAAAG--AA
*
1573 AGTGCAGCAGAAACAACAAGAAAAGCCCTTGGCCTCTGCATTGAAATCGAAATCAGCTTGCAGCA
129 AGTGAAGCAGAAACAACAAGAAAAGCCCTTGGCCTCTGCATTGAAATCGAAATCAGCTTGCAGCA
*
1638 ACTGTTGGAACTGCAGCTTGAAAAGATTCTGCTGTTGTTGTTCAGATTCGGAAGATGAAAGTAAC
1 ACTGTTGGAACTGCAGCTTGAAAAGATTCTGCTGTTGTTGTTCAGATTCGGAAGATGAAAGTAAT
*
1703 GTTTCAGAGGAAGAAAAAGTGCAGGAGAAACTACAAGAAAAGCCTAATGTTTCAAAGAAAG-AAG
66 GTTTCAGAGGAAGAAAAAGTGCAGCAGAAACTACAAGAAAAGCCTAATGTTTCAAAGAAAGAAAG
*
1767 TGAAGCAGAAACAAGAAGAAAAGCCCTTGGCCTCTGCATTGAAATCGAAATCAGCTTGCAGCA
131 TGAAGCAGAAACAACAAGAAAAGCCCTTGGCCTCTGCATTGAAATCGAAATCAGCTTGCAGCA
*
1830 ACTGTTGCAACTGCAGCTTGAAAAGATTCTGCTGTTGTTGTTCAGATTCGGAAGATGAAAGTAAT
1 ACTGTTGGAACTGCAGCTTGAAAAGATTCTGCTGTTGTTGTTCAGATTCGGAAGATGAAAGTAAT
*
1895 GTTTCAGAGGAAGAAAAAGTGCAGCAGAAACAACAAGAAAAGCC
66 GTTTCAGAGGAAGAAAAAGTGCAGCAGAAACTACAAGAAAAGCC
1939 CCTGGCCTCT
Statistics
Matches: 292, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
192 169 0.58
195 123 0.42
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (193 bp):
ACTGTTGGAACTGCAGCTTGAAAAGATTCTGCTGTTGTTGTTCAGATTCGGAAGATGAAAGTAAT
GTTTCAGAGGAAGAAAAAGTGCAGCAGAAACTACAAGAAAAGCCTAATGTTTCAAAGAAAGAAAG
TGAAGCAGAAACAACAAGAAAAGCCCTTGGCCTCTGCATTGAAATCGAAATCAGCTTGCAGCA
Done.