Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01230.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6158
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32


Found at i:5731 original size:21 final size:21

Alignment explanation


    Indices: 5707--5750  Score: 56
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       5697 CTCTCTCGAA

                                   
       5707 CTCCT-TT-GCTTCTCACTTCTT
          1 CTCCTCTTGGCTTC-CA-TTCTT

                                 
       5728 CTCCTCTTGGCTTCCATTCTT
          1 CTCCTCTTGGCTTCCATTCTT

              
       5749 CT
          1 CT

       5751 TAGACTTTGC


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  21   12  0.57
  22    4  0.19
  23    5  0.24

ACGTcount: A:0.05, C:0.39, G:0.07, T:0.50


Consensus pattern (21 bp):   
CTCCTCTTGGCTTCCATTCTT
Done.