Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01234.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3142
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28


Found at i:538 original size:15 final size:15

Alignment explanation


    Indices: 518--553  Score: 72
    Period size: 15  Copynumber: 2.4  Consensus size: 15

        508 CGTTGATGAT

                           
        518 GATGAGGAGGAGGAG
          1 GATGAGGAGGAGGAG

                           
        533 GATGAGGAGGAGGAG
          1 GATGAGGAGGAGGAG

                  
        548 GATGAG
          1 GATGAG

        554 AATGGAGATG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.33, C:0.00, G:0.58, T:0.08


Consensus pattern (15 bp):   
GATGAGGAGGAGGAG
Done.