Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01238.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4122
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29


Found at i:4048 original size:100 final size:100

Alignment explanation


    Indices: 3875--4077  Score: 352
    Period size: 100  Copynumber: 2.0  Consensus size: 100

       3865 CGGACAGTTG

                                                                             
       3875 CTGCTCTATCTACACAACCAAGAAAACTTAGTAAAGAAGTAAGAAAAGTAGCAAATAAGGTAGCT
          1 CTGCTCTATCTACACAACCAAGAAAACTTAGTAAAGAAGTAAGAAAAGTAGCAAATAAGGTAGCT

                                               
       3940 ACTCTTCCATGATTCTCTCTTGTTTAAACGTGTAA
         66 ACTCTTCCATGATTCTCTCTTGTTTAAACGTGTAA

                                  *              *                *    *     
       3975 CTGCTCTATCTACACAACCAAGGAAACTTAGTAAAGATGTAAGAAAAGTAGCAATTAAGTTAGCT
          1 CTGCTCTATCTACACAACCAAGAAAACTTAGTAAAGAAGTAAGAAAAGTAGCAAATAAGGTAGCT

                                         * *   
       4040 ACTCTTCCATGATTCTCTCTTGTTTAAACTTTTAA
         66 ACTCTTCCATGATTCTCTCTTGTTTAAACGTGTAA

               
       4075 CTG
          1 CTG

       4078 TTTTTGATCG


Statistics
Matches: 97,  Mismatches: 6, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 100   97  1.00

ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31


Consensus pattern (100 bp):   
CTGCTCTATCTACACAACCAAGAAAACTTAGTAAAGAAGTAAGAAAAGTAGCAAATAAGGTAGCT
ACTCTTCCATGATTCTCTCTTGTTTAAACGTGTAA
Done.