Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01252.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 970

Length: 1617
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37


Found at i:616 original size:34 final size:34

Alignment explanation


    Indices: 570--639  Score: 131
    Period size: 34  Copynumber: 2.1  Consensus size: 34

        560 ATCAATGACT

                                              
        570 TGGTTTTAGGAATCTTGGAGCTTCTAAAGTATCA
          1 TGGTTTTAGGAATCTTGGAGCTTCTAAAGTATCA

                   *                          
        604 TGGTTTTGGGAATCTTGGAGCTTCTAAAGTATCA
          1 TGGTTTTAGGAATCTTGGAGCTTCTAAAGTATCA

              
        638 TG
          1 TG

        640 CCCGTGTATT


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  34   35  1.00

ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39


Consensus pattern (34 bp):   
TGGTTTTAGGAATCTTGGAGCTTCTAAAGTATCA
Done.