Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01285.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4783
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33


Found at i:4569 original size:10 final size:10

Alignment explanation


    Indices: 4550--4578  Score: 51
    Period size: 10  Copynumber: 3.0  Consensus size: 10

       4540 CTAAGCATAT

                      
       4550 AAAT-AAAAA
          1 AAATAAAAAA

                      
       4559 AAATAAAAAA
          1 AAATAAAAAA

                      
       4569 AAATAAAAAA
          1 AAATAAAAAA

       4579 GGAAGAAGAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
   9    4  0.21
  10   15  0.79

ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10


Consensus pattern (10 bp):   
AAATAAAAAA
Done.