Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01286.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1235
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32


Found at i:1208 original size:16 final size:16

Alignment explanation


    Indices: 1154--1210  Score: 53
    Period size: 16  Copynumber: 3.4  Consensus size: 16

       1144 GTAATAGATG

                    *       
       1154 TAATTTTACCATATAT
          1 TAATTTTATCATATAT

                            *  
       1170 TAATTTTGAGATCA-AAAT
          1 TAATTTT---ATCATATAT

                             
       1188 GTAATTTTATCATATAT
          1 -TAATTTTATCATATAT

                  
       1205 TAATTT
          1 TAATTT

       1211 ATAATTCCAT


Statistics
Matches: 33,  Mismatches: 3, Indels: 10
        0.72            0.07        0.22

Matches are distributed among these distances:
  16   17  0.52
  17    3  0.09
  18    3  0.09
  19   10  0.30

ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49


Consensus pattern (16 bp):   
TAATTTTATCATATAT
Done.