Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01299.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3532
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35


Found at i:42 original size:5 final size:5

Alignment explanation


    Indices: 34--78  Score: 72
    Period size: 5  Copynumber: 9.0  Consensus size: 5

         24 ACTGTACACT

                *     *                                          
         34 ACTCT ACTCT ACTCA ACTCA ACTCA ACTCA ACTCA ACTCA ACTCA
          1 ACTCA ACTCA ACTCA ACTCA ACTCA ACTCA ACTCA ACTCA ACTCA

         79 GCGCCATCTT


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
   5   39  1.00

ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24


Consensus pattern (5 bp):   
ACTCA

Done.