Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01301.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2081
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32


Found at i:391 original size:6 final size:6

Alignment explanation


    Indices: 380--410  Score: 62
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        370 CCCTATCTAG

                                                
        380 ACGATC ACGATC ACGATC ACGATC ACGATC A
          1 ACGATC ACGATC ACGATC ACGATC ACGATC A

        411 TCATCATCAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.35, C:0.32, G:0.16, T:0.16


Consensus pattern (6 bp):   
ACGATC

Done.