Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01312.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 273

Length: 455
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36


Found at i:448 original size:10 final size:9

Alignment explanation


    Indices: 423--447  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

        413 TCAGATAAAC

                     
        423 AAAAAAATA
          1 AAAAAAATA

                     
        432 AAAAAAATA
          1 AAAAAAATA

                   
        441 AAAAAAA
          1 AAAAAAA

        448 AATTGCAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08


Consensus pattern (9 bp):   
AAAAAAATA
Done.