Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01314.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9834
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29


Found at i:2460 original size:19 final size:19

Alignment explanation


    Indices: 2436--2474  Score: 53
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2426 ATATTATTTT

                                
       2436 ATAAGAT-TATATATCTTAG
          1 ATAAGATATATA-ATCTTAG

                     *         
       2455 ATAAGATATGTAATCTTAG
          1 ATAAGATATATAATCTTAG

             
       2474 A
          1 A

       2475 AGATATGATT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  19   15  0.83
  20    3  0.17

ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38


Consensus pattern (19 bp):   
ATAAGATATATAATCTTAG

Found at i:8828 original size:30 final size:30

Alignment explanation


    Indices: 8794--8853  Score: 102
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       8784 TTTATTAAAA

                                          
       8794 TATTAGGTACATTCAAGTGTGATCATTCAT
          1 TATTAGGTACATTCAAGTGTGATCATTCAT

                     **                   
       8824 TATTAGGTATGTTCAAGTGTGATCATTCAT
          1 TATTAGGTACATTCAAGTGTGATCATTCAT

       8854 ATTTAAACTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42


Consensus pattern (30 bp):   
TATTAGGTACATTCAAGTGTGATCATTCAT
Done.