Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01316.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4059
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32


Found at i:3813 original size:29 final size:29

Alignment explanation


    Indices: 3776--3832  Score: 96
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       3766 ACAGAACGAT

                       *                 
       3776 AACGCAAGTAAGTAAAACGTAATATTTCG
          1 AACGCAAGTAACTAAAACGTAATATTTCG

                *                       
       3805 AACGTAAGTAACTAAAACGTAATATTTC
          1 AACGCAAGTAACTAAAACGTAATATTTC

       3833 AAATATAAAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   26  1.00

ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26


Consensus pattern (29 bp):   
AACGCAAGTAACTAAAACGTAATATTTCG

Found at i:3847 original size:29 final size:29

Alignment explanation


    Indices: 3788--3858  Score: 88
    Period size: 29  Copynumber: 2.4  Consensus size: 29

       3778 CGCAAGTAAG

                            *   *   *    
       3788 TAAAACGTAATATTTCGAACGTAAGTAAC
          1 TAAAACGTAATATTTCAAACATAAATAAC

                               *      *  
       3817 TAAAACGTAATATTTCAAATATAAATGAC
          1 TAAAACGTAATATTTCAAACATAAATAAC

                 *       
       3846 TAAAATGTAATAT
          1 TAAAACGTAATAT

       3859 GAAGTAAATA


Statistics
Matches: 36,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  29   36  1.00

ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31


Consensus pattern (29 bp):   
TAAAACGTAATATTTCAAACATAAATAAC
Done.