Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01316.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4149
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33


Found at i:3903 original size:29 final size:29

Alignment explanation


    Indices: 3866--3922  Score: 96
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       3856 ACAGAACGAT

                       *                 
       3866 AACGCAAGTAAGTAAAACGTAATATTTCG
          1 AACGCAAGTAACTAAAACGTAATATTTCG

                *                       
       3895 AACGTAAGTAACTAAAACGTAATATTTC
          1 AACGCAAGTAACTAAAACGTAATATTTC

       3923 AAATATAAAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  29   26  1.00

ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26


Consensus pattern (29 bp):   
AACGCAAGTAACTAAAACGTAATATTTCG

Found at i:3937 original size:29 final size:29

Alignment explanation


    Indices: 3878--3948  Score: 88
    Period size: 29  Copynumber: 2.4  Consensus size: 29

       3868 CGCAAGTAAG

                            *   *   *    
       3878 TAAAACGTAATATTTCGAACGTAAGTAAC
          1 TAAAACGTAATATTTCAAACATAAATAAC

                               *      *  
       3907 TAAAACGTAATATTTCAAATATAAATGAC
          1 TAAAACGTAATATTTCAAACATAAATAAC

                 *       
       3936 TAAAATGTAATAT
          1 TAAAACGTAATAT

       3949 GAAGTAAATA


Statistics
Matches: 36,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  29   36  1.00

ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31


Consensus pattern (29 bp):   
TAAAACGTAATATTTCAAACATAAATAAC
Done.