Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01317.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 557

Length: 929
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32


Found at i:262 original size:141 final size:141

Alignment explanation


    Indices: 8--265  Score: 385
    Period size: 141  Copynumber: 1.8  Consensus size: 141

          1 CCCTCAC

                                     **                                      
          8 CATTCTGAAACCTTTCTCACTCAACTTGATAGCCTCTCTCACTCAGCCTCTATTACTTGCTTCGC
          1 CATTCTGAAACCTTTCTCACTCAACCCGATAGCCTCTCTCACTCAGCCTCTATTACTTGCTTCGC

               * *                     *                                     
         73 CTCTGGCCACTAGCCCCAAACTCTTCTTGGGCATGCCATAAAGAAAGGCAAGAAGAGAGCTGCCT
         66 CTCCGACCACTAGCCCCAAACTCTTCTCGGGCATGCCATAAAGAAAGGCAAGAAGAGAGCTGCCT

                       
        138 TTGTTTTTCTT
        131 TTGTTTTTCTT

                           * *                                      *        
        149 CATTCTGAAACCTTTGTTACTCAACCCGATAGCC-CTTCTCAC-CTAGCCTCTATTGCTTGCTTC
          1 CATTCTGAAACCTTTCTCACTCAACCCGATAGCCTC-TCTCACTC-AGCCTCTATTACTTGCTTC

              *             *                         *           
        212 GCTTCCGACCACTAGCTCCAAACTCTTCTCGGGCATGCCATAGAGAAAGGCAAG
         64 GCCTCCGACCACTAGCCCCAAACTCTTCTCGGGCATGCCATAAAGAAAGGCAAG

        266 GAGACAGTCG


Statistics
Matches: 104,  Mismatches: 11, Indels: 4
        0.87            0.09        0.03

Matches are distributed among these distances:
 140    2  0.02
 141  102  0.98

ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29


Consensus pattern (141 bp):   
CATTCTGAAACCTTTCTCACTCAACCCGATAGCCTCTCTCACTCAGCCTCTATTACTTGCTTCGC
CTCCGACCACTAGCCCCAAACTCTTCTCGGGCATGCCATAAAGAAAGGCAAGAAGAGAGCTGCCT
TTGTTTTTCTT
Done.