Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01320.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2388
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28


Found at i:2295 original size:21 final size:21

Alignment explanation


    Indices: 2262--2302  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2252 CAACGTGGCA

                         *       
       2262 AGTTACTTGGCCATATCAGCT
          1 AGTTACTTGGCCACATCAGCT

                                 
       2283 AGTTAACTT-GCCACATCAGC
          1 AGTT-ACTTGGCCACATCAGC

       2303 GGTCCAGTTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21   14  0.78
  22    4  0.22

ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29


Consensus pattern (21 bp):   
AGTTACTTGGCCACATCAGCT
Done.