Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01320.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4237
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:4144 original size:21 final size:21

Alignment explanation


    Indices: 4111--4151  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4101 CAACGTGGCA

                         *       
       4111 AGTTACTTGGCCATATCAGCT
          1 AGTTACTTGGCCACATCAGCT

                                 
       4132 AGTTAACTT-GCCACATCAGC
          1 AGTT-ACTTGGCCACATCAGC

       4152 GGTCCAGTTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  21   14  0.78
  22    4  0.22

ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29


Consensus pattern (21 bp):   
AGTTACTTGGCCACATCAGCT
Done.