Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01332.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 208

Length: 347
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.38


Found at i:152 original size:9 final size:8

Alignment explanation


    Indices: 127--156  Score: 53
    Period size: 8  Copynumber: 3.9  Consensus size: 8

        117 TGAATTTAGG

                    
        127 TTTTTA-T
          1 TTTTTATT

                    
        134 TTTTTATT
          1 TTTTTATT

                    
        142 TTTTTATT
          1 TTTTTATT

                   
        150 TTTTTAT
          1 TTTTTAT

        157 GAAGAAGTCA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   7    6  0.27
   8   16  0.73

ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87


Consensus pattern (8 bp):   
TTTTTATT
Done.