Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01336.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 472

Length: 788
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37


Found at i:681 original size:3 final size:3

Alignment explanation


    Indices: 673--733  Score: 104
    Period size: 3  Copynumber: 20.3  Consensus size: 3

        663 ATGCCCTTGT

                                                  *              *         
        673 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC TCC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

                             
        721 TTC TTC TTC TTC T
          1 TTC TTC TTC TTC T

        734 CGTGTACTGT


Statistics
Matches: 54,  Mismatches: 4, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   54  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTC

Done.