Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01355.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2207
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39


Found at i:2107 original size:19 final size:19

Alignment explanation


    Indices: 2068--2107  Score: 55
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       2058 GGTTAATTAG

                            *  
       2068 AGTTTAATTAAGTGAATTT
          1 AGTTTAATTAAGTGAAATT

                                
       2087 AGTTTAATTAAG-GATAATT
          1 AGTTTAATTAAGTGA-AATT

              
       2106 AG
          1 AG

       2108 ATAAAAGGAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  18    2  0.11
  19   17  0.89

ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42


Consensus pattern (19 bp):   
AGTTTAATTAAGTGAAATT
Done.