Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01364.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4251
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:2019 original size:114 final size:114

Alignment explanation


    Indices: 1644--2079  Score: 383
    Period size: 114  Copynumber: 3.8  Consensus size: 114

       1634 CCAACTCTAT

                         *    *       *     *    * *     *                   
       1644 GAATCCTGTAACTAATCCTATGGCTATAGTTGCATCCCCGGAGCATG-GTGCTACTACCATTCCA
          1 GAATCCTGTAACTTATCCCATGGCTAAAGTTGAATCCACAGAG-ACGAGTG-T--TACCATTCCA

              *  *  *  *       *          *   *   **  *          
       1708 GTGGAGACCAACTTAGACCGTGTAAAAGATGAAGATTTGTCCTACAACCCCAA
         62 GTAGATACGAATTTAGACCATGTAAAAGATAAAGGTTTACCCAACAACCCCAA

                 *              *    * *  * *    *       *              *   *
       1761 GAATCTTGTAACTTATCCCAAGGCTGATGTAGCATCCTCAGAGACAAGTGTTACCATTCCGGTAA
          1 GAATCCTGTAACTTATCCCATGGCTAAAGTTGAATCCACAGAGACGAGTGTTACCATTCCAGTAG

                         **         *          *             
       1826 ATACGAATTTAGAATATGTAAAAGGTAAAGGTTTATCCAACAACCCCAA
         66 ATACGAATTTAGACCATGTAAAAGATAAAGGTTTACCCAACAACCCCAA

                       *                         *                * *        
       1875 GAATCCTGTAAGTTATCCCATGGCTAAAGTTGAATCCGCAGAGACGAGTGTTACAACTCCAGTAG
          1 GAATCCTGTAACTTATCCCATGGCTAAAGTTGAATCCACAGAGACGAGTGTTACCATTCCAGTAG

                                 *      *     *     * *      
       1940 ATACGAATTTAGACCATGTAACAGATAACGGTTTGCCCAATAGCCCCAA
         66 ATACGAATTTAGACCATGTAAAAGATAAAGGTTTACCCAACAACCCCAA

                          *   *                              **              
       1989 GAATCCTGTAACTTCTCCTATGGCTAAAGTT-ACATCCACAGAGACGAGCATTACCATTCCAGTA
          1 GAATCCTGTAACTTATCCCATGGCTAAAGTTGA-ATCCACAGAGACGAGTGTTACCATTCCAGTA

                *                 *     
       2053 GATATGAACTTT-GACCATGTAGAAGAT
         65 GATACGAA-TTTAGACCATGTAAAAGAT

       2080 TCCCATGCCA


Statistics
Matches: 257,  Mismatches: 59, Indels: 9
        0.79            0.18        0.03

Matches are distributed among these distances:
 113    1  0.00
 114  215  0.84
 115    3  0.01
 116    2  0.01
 117   36  0.14

ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25


Consensus pattern (114 bp):   
GAATCCTGTAACTTATCCCATGGCTAAAGTTGAATCCACAGAGACGAGTGTTACCATTCCAGTAG
ATACGAATTTAGACCATGTAAAAGATAAAGGTTTACCCAACAACCCCAA
Done.