Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01380.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1882
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36


Found at i:547 original size:30 final size:30

Alignment explanation


    Indices: 511--571  Score: 122
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        501 TCCTAAGGTT

                                          
        511 CTTATTTATGATGTTCTTAATGTTCTTAGA
          1 CTTATTTATGATGTTCTTAATGTTCTTAGA

                                          
        541 CTTATTTATGATGTTCTTAATGTTCTTAGA
          1 CTTATTTATGATGTTCTTAATGTTCTTAGA

             
        571 C
          1 C

        572 GAATGATTAC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.23, C:0.11, G:0.13, T:0.52


Consensus pattern (30 bp):   
CTTATTTATGATGTTCTTAATGTTCTTAGA
Done.