Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01384.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1868
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:279 original size:6 final size:6

Alignment explanation


    Indices: 268--301  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        258 GCTCGCAGAT

                                                   
        268 CCACCG CCACCG CCACCG CCACCG CCACCG CCAC
          1 CCACCG CCACCG CCACCG CCACCG CCACCG CCAC

        302 TACAACCAAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.18, C:0.68, G:0.15, T:0.00


Consensus pattern (6 bp):   
CCACCG

Found at i:1699 original size:32 final size:32

Alignment explanation


    Indices: 1656--1726  Score: 124
    Period size: 32  Copynumber: 2.2  Consensus size: 32

       1646 GTGGTTGGTT

                  *                         
       1656 GTGTTTTGGTGGGAGCAGCAGCAAACCCGGTC
          1 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC

                                           *
       1688 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTG
          1 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC

                   
       1720 GTGTTTA
          1 GTGTTTA

       1727 AGTGTCATTT


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  32   37  1.00

ACGTcount: A:0.20, C:0.18, G:0.38, T:0.24


Consensus pattern (32 bp):   
GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC
Done.