Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01384.F11

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2827
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:290 original size:6 final size:6

Alignment explanation


    Indices: 279--312  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        269 GCTCGCAGAT

                                                   
        279 CCACCG CCACCG CCACCG CCACCG CCACCG CCAC
          1 CCACCG CCACCG CCACCG CCACCG CCACCG CCAC

        313 TACAACCAAA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.18, C:0.68, G:0.15, T:0.00


Consensus pattern (6 bp):   
CCACCG

Found at i:2651 original size:32 final size:32

Alignment explanation


    Indices: 2615--2685  Score: 124
    Period size: 32  Copynumber: 2.2  Consensus size: 32

       2605 GTGGTTGGTT

                  *                         
       2615 GTGTTTTGGTGGGAGCAGCAGCAAACCCGGTC
          1 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC

                                           *
       2647 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTG
          1 GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC

                   
       2679 GTGTTTA
          1 GTGTTTA

       2686 AGTGTCATTT


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  32   37  1.00

ACGTcount: A:0.20, C:0.18, G:0.38, T:0.24


Consensus pattern (32 bp):   
GTGTTTAGGTGGGAGCAGCAGCAAACCCGGTC
Done.