Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga12g01393.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1992
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34


Found at i:234 original size:2 final size:2

Alignment explanation


    Indices: 221--255  Score: 52
    Period size: 2  Copynumber: 17.5  Consensus size: 2

        211 TCACAGATCA

                      *              *                          
        221 CT CT CT CG CT CT CT CT CG CT CT CT CT CT CT CT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C

        256 CCCCTTGGAC


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.00, C:0.51, G:0.06, T:0.43


Consensus pattern (2 bp):   
CT

Found at i:236 original size:10 final size:10

Alignment explanation


    Indices: 221--255  Score: 61
    Period size: 10  Copynumber: 3.5  Consensus size: 10

        211 TCACAGATCA

                      
        221 CTCTCTCGCT
          1 CTCTCTCGCT

                      
        231 CTCTCTCGCT
          1 CTCTCTCGCT

                   *  
        241 CTCTCTCTCT
          1 CTCTCTCGCT

                 
        251 CTCTC
          1 CTCTC

        256 CCCCTTGGAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  10   24  1.00

ACGTcount: A:0.00, C:0.51, G:0.06, T:0.43


Consensus pattern (10 bp):   
CTCTCTCGCT

Done.